He has also been charged with two counts of attempted murder and assault with a firearm and one count of firearms possession for the 31 March incident where two other persons were injured.
The occupier pleaded not guilty to the charges on Tuesday and bail was imposed at $ 6.53 million. His next court appearance, a pretrial hearing, was scheduled for 18 June.
CNN has reached an attorney representing Holder for comments but did not receive an immediate response.
If convicted of murder, Holder will face life sentence in prison, according to the district attorney's office. The penalty for conviction on attempted murder is 15 years.
The grand jury returned the indictment, which was sealed on Tuesday, on May 9, said the district attorney's office.